Data & Resources

Resources

Phylogenetic Map for SARS-COV-2 Data

Early Release

Data on this website is updated for sequencing performed at CSIR-IGIB and is therefore updated only until November/December 2021

Sequences and analysis updates are released rapidly and should be considered draft and subject to change.

(Please note this is not peer reviewed and the contents are are subject to changes with new data and evidence emerging. The release should be considered as a draft and of scientific interest and may not be used for public communication)

Early Release Sequence Data
Interim Data Analysis Results Last Updated 28-12-2021 -Status Report of Samples from Nov / Dec 2021
Interim Data Analysis Results Last Updated 07-11-2021 - Status Report of Samples from Aug / Sept 2021
Interim Data Analysis Results Last Updated 30-08-2021 - Status report of Samples from July / early Aug 2021
Interim Data Analysis Results Last Updated 30-07-2021 - Status report of Samples from June / early July 2021
Interim Data Analysis Results Last Updated 20-06-2021 - Status report of Samples from May 2021
Interim Data Analysis Results Last Updated 19-05-2021 - Status report of Samples from April 2021
Interim Data Analysis Results Last Updated 27-04-2021 - Status report of Samples from March 2021
Interim Data Analysis Last Updated 19-04-2021 - Status report of Samples from Feb 2021
Interim Data Analysis Results Last Updated 15/02/2021 - Status report of Samples from Dec / Jan 2021

Publications and Preprints

Rophina M, Pandhare K, Shamnath A, Imran M, Jolly B, Scaria V

ESC - a comprehensive resource for SARS-CoV-2 immune escape variants

Nucleic Acids Research, gkab895, https://doi.org/10.1093/nar/gkab895

J, Beena P., Bani Jolly, Neethu John, Rahul C. Bhoyar, Nisha Majeed, Vigneshwar Senthivel, Fairoz C. P, et al.

Genomic Survey of SARS-Cov-2 Vaccine Breakthrough Infections in Healthcare Workers from Kerala, India.

Journal of Infection (2021) https://doi.org/10.1016/j.jinf.2021.05.018

Bhoyar RC, et al,

High throughput detection and genetic epidemiology of SARS-CoV-2 using COVIDSeq next generation sequencing

PLoS ONE (Accepted 2021) Preprint on bioRxiv 2020.08.10.242677; doi: https://doi.org/10.1101/2020.08.10.242677

Radhakrishnan C, Divakar MK, Jain A et al,

Initial insights into the genetic epidemiology of SARS-CoV-2 isolates from Kerala suggest local spread from limited introductions

Frontiers in Genetics (Accepted 2021)preprint on bioRxiv 2020.09.09.289892; doi: https://doi.org/10.1101/2020.09.09.289892

Pre-prints

Preprints are not peer-reviewed and the data release should be considered as draft and is subject to changes. The data is of scientific interest and may not be used for public communication without appropriate checks.

Niyas, V. K. M., Shamnath, A., KJ, R., Bhoyar, R. C., N, V. A., Jolly, B. et al.Genomic analysis of early SARS-CoV-2 breakthrough infections from the state of Kerala suggest a preponderance of variants of concern.OSF Preprints https://doi.org/10.31219/osf.io/vn3xs

Open Protocols

Jolly B, Scaria V

Sample Logistics

The Sample Logistics Document version 3.0 Dated 08/01/2021